Thursday, June 3, 2010

For Memorial Day

It is incumbent on every generation to pay its own debts as it goes. A principle which if acted on would save one-half the wars of the world.

Thomas Jefferson



We could teach this in history class.
We could teach this in health.
We could especially teach it in biology class.

But whichever class we choose, we must teach this.

Right after the Senior Award ceremony, I asked one of our talented musicians, a young man who aspires to play professionally in an major orchestra, what he planned to do next year.

He had an appointment early the next morning at the local USMC recruiter's office.




First lightning bug


First lightning bug tonight. I never tire of lightning bugs.

I

Dusk settled on the lake. I could hear the kiss of bluegills as they sucked down insects struggling on the surface.

A few lightning bugs flashed above the mirrored surface. Attracted by their own reflections, they swooped ever closer to the lightning bugs flashing below them.

Fish may not be smart, but they're not all get-out stupid, either. And a bluegill will jump if hungry enough. A few were hungry enough. Inside their bellies glowed a few foolish lightning bugs.



II

Lightning bug light is cool-literally. Luciferin combines with ATP, the energy molecule of life--the resulting compound combines with oxygen, catalyzed by luciferase, and light results. Even tiny amounts of ATP will cause luciferin to light, as long as oxygen is present. While man has never been to Mars, bits of lightning bugs have--luciferin is an extremely sensitive detector of ATP. If it flashes, carbon-based life may be present.

Luciferase from the North American firefly (Photinus pyralis) is the enzyme of choice for reporter gene assays. Luciferase catalyzes the oxidation of a firefly-specific substrate called luciferin to produce light. This reaction is extremely efficient and the quantum yield is the highest of any characterized bioluminescent reaction. The bright signal makes this a valuable enzyme to use for reporting promotor activity. • Packard’s LucLite® assay system, introduced in 1994, produces a long lived glow type signal with a [half-life] of several hours, which makes it ideal for use in noninjector based HTS luminometers, like the Packard TopCount® NXT Microplate Scintillation and Luminescence Counter or the Packard LumiCount® Microplate Luminometer.

Luclite Plus Reporter Gene Assay System, 20,000mL from PerkinElmer, http://www.biocompare.com/itemdetails.asp?itemid=389636&catid=1620


Scientist have yet to synthesize luciferin, so they buy lightning bugs.



III

My daughter dug out a tiny mudhole for me in our backyard. At dusk, I sit opposite the pokeweed I am learning to like, under a stray white birch I have always liked. Lightning bugs arise from the earth, flashing their "J"'s, looking for love. Harry Potter, like the Bible, makes sense sitting outside on an early June evening.


I read until the dusk chases words off the page, my feet resting on a small stone wall we built together.

A flash just below my right foot.

I break from Harry Potter. A second scurrying critter rumbles about the flash. The flashing becomes frantic, several short blips in less than a few seconds. My eyes adjust--a spider dances around its prey.

I've never seen a lightning bug flash quickly like that, but then I've never seen one eaten by a spider either. A lightning bug makes a flash by adding a tiny bit of ATP to luceferin. In our mechanistic view of the world, not a bad worldview if you're in the business of conquering it, lightning bugs flash instinctively. They are not known to flash for defensive purposes.

I cannot know why this one flashed, but I do know that lightning bugs, at least this one, had a pattern distinct from its cherchez la femme mode when struggling with a spider.


I almost didn't try to "save" it--a good naturalist observes, does not interfere. The spider has as much a right to the meal as I do to mine. Death by spider is likely to be quicker than death by starvation if the critter could no longer fly.


I pulled the frenetically flashing bug out of the web--a white wisp of web stuck to its backside. I set it on a leaf of the birch with mixed feelings. It will die slowly because my imagination would not allow me to let the spider bite it.

As the critter struggled with its first pair of legs to grasp the edge of the leaf, I gently pulled back the stick. The spider silk stuck to my stick. The lightning bug scootched a few millimeters, no longer flashing, and stood still.

I watched a moment longer. The lightning bug opened up its beetley shell, opened its wings, and flew away.

A moment later, a lightning bug brushed my leg at the bottom of its "J". No way to know if it was the same one. And it really doesn't matter.


IV

Some Asian lightning bugs flash in unison. The lightning bugs in the Jersey area, at least the ones that make a J, are not known to do this (according to the scientists). Oh, occasionally they'll accidentally flash together a few seconds after the flash of a bright light, as though they were all resetting their bellies after seeing a god, but left alone, our fireflies are supposed to be the individualistic sorts.


The local critters must be illiterate--once or twice a dusk, they amuse themselves with synchronous flashing. (“Amuse” sounds like anthropomorphizing, of course--it’s an interesting word, comes from the French amuser, “to stupefy”--we’re most amused when our brains are buggy.) .


V

One poor fellow one evening couldn’t turn off his belly --he’d glow properly enough in his “J”, but still fizzled a bit as he looked for a response--doubt he could see much light beyond his perpetually lit self.

I muttered “padiddle.” .


VI

Lightning bugs are, obviously alive. They have a lot of ATP. They have a lot of luciferin and luciferase. We made lightning bug earrings, lightning bug drawings, we’d smear dying and dead lightning bugs over our faces and laugh and scream like the atavistic creatures we were, mock Indian face paint.


VII

I am a science teacher; I am not a scientist. Alot of folks are confused about what constitutes science. We want children to be amazed. You can purchase, via PayPal, a lightning bug “collection system.” You have a choice of sizes, and the handle glows in the dark. Imagine that! No doubt safer than punching holes in a half-rinsed mayonnaise jar.

Kids can study and be fascinated by all the little bugs found in the average back yard. Firefly lanterns allow children to watch the lighnting sicbugs light up. The bugs can be returned to nature where they were found after a day or two of enjoyment.

Plum Creek Marketing Entomology Products for Kids.



Another “experiment” suggests that kids catch lightning bugs in a jar for 5 minutes, record their observations, then let them go.


Took me 40 years to realize I learn a whole lot more doing nothing, feet up on a tiny stone wall next to my daughter’s puddle.

On oil spills, disconnected Presidents, and Bloomfield

This is a longish rant meant mostly for me--
it will be as effective as screaming into a pillow,
and, I hope, just as comforting.




Last night I sat in on our Senior Awards Night, a lovely affair commemorating the deeds of our senior class. Over 90 awards were given, many of them specific to our town and our history.

The Ralph C. Diller Outstanding Choir Award, The Eric Segal Memorial Scholarship , The Raymond W. Hartman Outstanding Band Member Award...

Bloomfield has been around a long time--it's a proud working class town that still values effort over just about anything.

...The Edith M. Albinson Choral Award, The Margaret Sherlock Memorial Chemistry Scholarship, The Mary E. Boylan Egan Scholarship...

One award goes to a student with a "grade average of B-C, well rounded person in school, civic and youth activities." Another to a "student who has through perseverance and effort has maximized his potential."

...Suzan Hertzberg-Bohrer--Jason Pelusio Scholarship, Hilda R. Taffet Scho
larship,
Michael Castles Memorial Scholarship...


In 1849, Bloomfield joined the Free School Act, taxing its citizens to provide public education to its children. The Bloomfield Oakes Woolen Mill provided uniforms in the Civil War. A brownfield marks the early development of the atomic bomb in our neighborhood. Street signs carry the names of so many from town who died in wars past.

We've paid our dues.

...The Gay Gerber Memorial Scholarship, The George Daudelin Memorial Scholarship,
The Michael Cozzolongo Memorial Scholarship,
The Joseph A. Bongiorno Career Education Senior Awards...


For all the shouting coming from the Scarecrow in D.C., the folks in Bloomfield are still footing the bill for educating the children in their town. Anyone who has spent any real time in town knows someone who knows someone who knows someone--all of us are connected.

And so sometimes when I hear folks down in Louisiana expressing frustrations, I may not always think that they're comments are fair; on the other hand, I probably think to myself, these are folks who grew up fishing in these wetlands and seeing this as an integral part of who they are - and to see that messed up in this fashion would be infuriating.

A man who moved yanked his children from Illinois

No, Mr. President, folks who know the land under their feet, the water under their boats, do not see "this" as an integral part of who they are. It is, indeed, part of who they are.

Churlish parochialism gets lots of press. Farmers are hicks, clammers are slow, and commercial fisherman piss away all their money within hours of coming into port.

A real education, one worthy of producing citizens who the land enough to defend it to their deaths, must be parochial. If you do not love the earth beneath your feet, you cannot love this huge abstract thing called country.

I cannot know America any more than I can know the moon. I do know, however, the patch of land I tend in New Jersey. I know my clam bed as well as maybe a few dozen other people on this planet.

I will not fight for abstract, nonsensical causes. I will, however, defend a patch of Grassy Sound should someone try to take it.

The same week Mr. Obama made his inane statement, one that resists partisan classification, the Common Core State Standards Initiative released the final version of their standards, designed to make American children fit for the global workforce.

These standards provide appropriate benchmarks for all students, regardless of where they live, and allow states to more effectively help all students to succeed.

Steve Paine, West Virginia State Superintendent of Schools


I looked for the part about clamming--I think they missed it.

A kid growing up in Jersey needs to know about eel grass and horseshoe crabs; a kid growing up in Wyoming may need to learn a thing (or two) about grizzlies and elk. No child needs to learn how to be a private corporate clown. Public schools should be for the public good.If you want to raise a child who preys on others, there are plenty of private schools that will be glad to take your money.

That so few folks see the disconnect we are cultivating is infuriating.

I have no problem with some children "know[ing] and apply[ing] the Binomial Theorem for the expansion of (x + y)n in powers of x and y for a positive integer n, where x and y are any numbers, with coefficients determined for example by Pascal’s Triangle"--but I have a HUGE problem making that part of a core curriculum in any population where half the students are below average intelligence.

We have a decent town, with a lot of decent folks working hard to raise families, pay taxes, and, dare I say it, pursue happiness. You can live comfortably in Bloomfield even if (or maybe especially) you're not terribly ambitious.

If you cannot see the Bloomfield in me, or in my children, you have no business telling me how to raise them, no matter how much Bill Gates or Vartan Gregorian may need them. for their businesses.

Clamming is an honest business that requires a local education. Too bad we've gone done killed all the clams.

Tuesday, June 1, 2010

June




I want to crawl face down in the fields
and graze on the wild strawberries, my clothes
stained pink, even for seven years
if I must, if they exist. I want to lie out
on my back under the thousand stars and think
my way up among them, through them,
and a little distance past them, and attain
a moment of absolute ignorance,
if I can, if human mentality lets us.

Galway Kinnell, from The Seekonk Woods


I have never regretted any moment outside. As in under the sky.
Not one single moment.

I've been cozy, chilled, hot, wet, dry, stung, caressed by the breeze, and almost drowned in the sea. I've feasted on wild berries, feared wild beasts. I've watched ants for hours, and the moon forever.

I've seen life take life, and I've taken lives. I've heard the last yelps. I've eaten critters that squirmed in my hands. I watched a lightning bug flicker in desperation as a spider wrapped her silk around and around and around.

Tonight the honeysuckle blossoms steal words from my cortex, and I welcome the thieves.

June lasts forever when it comes, and is impossible to remember when it's gone. No words are needed in June. None. Life is as abundant as the light. I cannot help myself--I worship the sun now, so tangible on my skin, so obviously the giver, as it settles in the north for a spell.

Tonight somewhere in my town a child is doing homework on an early June dusk. Probably safer that way. Can't have children shirk responsibilities. Keep them indoors. They must stay focused!

Say you're a biology teacher, and, say, you know a lot more biology lies outside the textbook than in it. You're older now, with many more Junes past than any yet to be (graciously) received. What does a 15 year old child need to know? What do any of us need to know?

Ambition is well-rewarded in our culture. Delayed gratification is a virtue. If you want to be rich or powerful, chances are pretty good you won't die in the same town that welcomed your birth.

There's also a good chance you won't know where the local wild mulberries lie ripe for the picking, or where clams can be raked.

In June, my motives are clear--teach the children to see the world under their noses. The world offers riches beyond a wealthy family's dreams, but you need to go outside.

Kids know this until we teach them to forget. Most classes fit well in a classroom--a good biology class tends to ooze outwards.


Sunday, May 23, 2010

Craig Venter: Cautionary Tale Two

I feel like Chicken Little here--



If it is used toward the good, to treat pathologies, we can only be positive. If it turns out not to be … useful to respect the dignity of the person, then our judgment would change.

Monsignor Rino Fisichella, Vatican’s top bioethics official



Craig Venter has led a mythological life. If DNA is the soul of life, he has become a god. He has created a synthetic DNA molecule, and successfully replaced the original genome of a bacterium. It reproduced. It's still reproducing. Dr. Venter holds the keys to the Kingdom.

Has the Vatican forgotten the story of the Tree of Knowledge? Or is Msgr. Fisichella just a very trusting cleric?

***

While Venter has not created a cell from scratch, his artificial genome did, once placed inside a bacterium, direct the manufacture of a completely new cell. Manipulate the genome, manipulate
life.

Our science curriculum, increasingly influenced by businesses and national committees, does little to instill joy in schooling. Venter's latest venture will lead to further calls to cram biotechnological jargon into the skulls of high school sophomores to try to make up for the amazingly uncritical skills of their parent's generation.

I teach science, not ethics, but here's a letter I need to write:

Dear His Holiness, the Pope,

I realize you are busy, and that the Church still has some fixing to do despite apologizing to Galileo in 1992, but my hands are tied.

I am a science teacher, a government employee charged with teaching technology in the classroom. Dr. Venter just pushed hubris to a new level and the best response the Vatican can come up with is meh?


Ahem.

This is a big deal. You are The Church, we need a better response than let's wait and see. The story of the Tree of Knowledge in Genesis is an old one, older than Christianity, older than Judaism. Its lesson was true for the Sumerians as it is true for us now.

We live in a culture where taboo is taboo.

Maybe a peek at what others are saying will get the folks in Vatican City back in the muck of life.

This experiment will certainly reconfigure the ethical imagination.
Paul Rabinow
Anthropologist, UC Berkeley
Maybe instead of reconfiguring our ethical imagination to fit our needs, we reconfigure our needs to fit our limited ethical imagination.

We didn't get any smarter, just more powerful.

Craig Venter: Cautionary Tale One



Chemistry still struck particular fear in my heart. The subject was crucial for a career in medicine, and yet high school had left me allergic even to the thought of grappling with the world of atoms and molecules.


Craig Venter almost ended his life by swimming out to sea off the coast of Viet Nam. He was a medic during the Tet offensive, when the Viet Cong and the NVA pushed over 80,000 soldiers south. He lost many lives, and chose to end his own.

A shark circling around him, like Jonah's great fish,changed his mind and he swam through miles of dark water back to the bloody shores of Nam.

Three decades later he would be instrumental in developing the human genome. This week Science announced that Venter has successfully placed an artificially made DNA molecule into an organism, and it replicated. If DNA is the soul of life, Venter is now God.

While I am a Luddite who fears powerful folks sashaying with hubris, I cannot help but wonder:
Which came closer to preventing Dr. Venter from venturing this far?

A near suicidal act to wash away the blood of hundreds of men he could not save? Or was it a high school science class that nearly killed an innate love of untangling the unknown?



Saturday, May 22, 2010

Our horseshoe crab trip


What did you imagine lies in wait anyway
at the end of a world whose sub-substance
is glaim, gleet, birdlime, slime, mucus, muck?


from Why regret?
Galway Kinnell

Yesterday we took over 160 high school students to Sandy Hook to see horseshoe crabs.
A few had never seen the ocean before.
A few dared let a fiddler crab tickle their palms.
A few touched a live striped bass, a yard long and just pulled from the ocean.
A few saw an osprey glide of the bay.
A few held comb jellies in a sea water puddle in their cupped hands.
One lost his flip flop to the muck.

I have no idea how much "biology" my lambs learn in the classroom. I suppose they learn as much as anyone else required to sit for the New Jersey EOC Biology Exam, and after 10 years of mandatory schooling, they're pretty good at taking tests about things they do not get (as no one does) to please folks they never met (as we all do).

I have no idea how to test what a child learns as his foot gets caught in the muck, a gray cloud now hiding his footprint, the sweet smell of life and death mingling in mud.

I do know this. The children were as alive as I have ever seen them. I suspect that many of them will carry vivid moments tucked between their amygdalas and their cortical gyri.

We are trained to keep the mulch and the muck hidden from the children, the classroom is safer (and much easier) that way. It was fun to teach real biology life for a day.




I bet even Arne might get it if he spent some time mucking around....

Yep, same photo--I love it. Look at the twists and turns, decisions made
by a chilled tiny horseshoe crab on a late February morning.